The minimum number of submitted sequences is 4.
The maximum number is 500.000 (see table for folding limitation).
||Max RNA length
|None (input already has dot-bracket)
input sequences are accepted in multiFASTA format:
The line containing the name and/or the description of the sequence starts with a ">";
The words following the ">" are interpreted as the RNA id;
The following line should be the RNA nucleotide sequence;
The subsequent lines are interpreted as secondary structure information (Optional)
- Please consider that any duplicate ID in the fasta file could cause unexpected errors.
The IUPAC notation is accepted for nucleotides (case-insensitive).
Please consider a run-time roughly equal to 1.5 minutes per motif in standard conditions (*** M*R*S*10-4 minutes
, where M
is the number of motifs requested, R
is the number of random starts, S
is the number of Total Steps, by default 15000). To get the full wait-time, if structures are not provided, add the time needed by the chosen secondary structure predictor (for RNAfold usually max 1 minute per 1000 sequences. RNAstructure takes longer), see the limits table and graphs
for detailed information).